Variant report

Variant	rs17083618
Chromosome Location	chr6:121753361-121753362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121753097..121755980-chr6:121757909..121760037,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17052912	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083515	0.83[ASN][1000 genomes]
rs17083518	0.89[ASN][1000 genomes]
rs17083522	0.92[ASN][1000 genomes]
rs17083533	0.93[ASN][1000 genomes]
rs17083616	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083633	0.80[ASN][1000 genomes]
rs1925223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2038838	0.83[ASN][1000 genomes]
rs2071165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2071166	0.92[ASN][1000 genomes]
rs2892767	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3763174	0.99[ASN][1000 genomes]
rs3805785	0.80[ASN][1000 genomes]
rs3805786	0.85[ASN][1000 genomes]
rs3805788	0.92[ASN][1000 genomes]
rs62427606	0.83[AFR][1000 genomes]
rs62427607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67144741	0.92[AFR][1000 genomes]
rs6901938	0.92[AFR][1000 genomes]
rs6911179	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6917166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932422	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73532207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73532213	0.85[AFR][1000 genomes]
rs73532215	0.90[ASN][1000 genomes]
rs7749457	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121752000-121756400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:121752000-121757400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:121752200-121755600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:121752200-121755600	Weak transcription	Aorta	Aorta
5	chr6:121752200-121755600	Weak transcription	Right Atrium	heart
6	chr6:121752200-121755600	Weak transcription	NHDF-Ad	bronchial
7	chr6:121752200-121756400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:121752200-121757400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:121752400-121754400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:121752400-121755600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:121752400-121755800	Weak transcription	HUVEC	blood vessel
12	chr6:121752400-121756200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:121752400-121756600	Weak transcription	Fetal Lung	lung
14	chr6:121752600-121753600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:121752600-121753800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:121752600-121755600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:121752600-121755600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:121752600-121755600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:121752600-121755600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:121752600-121755600	Weak transcription	Osteobl	bone
21	chr6:121752600-121756400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:121752800-121754200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:121752800-121754200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:121752800-121754200	Weak transcription	A549	lung
25	chr6:121752800-121755400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:121752800-121755600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:121752800-121756400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:121753000-121753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:121753000-121753400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:121753000-121753400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:121753000-121753400	Weak transcription	Fetal Heart	heart
32	chr6:121753000-121754000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:121753200-121755600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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