Variant report

Variant	rs3805786
Chromosome Location	chr6:121760979-121760980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17052912	0.84[ASN][1000 genomes]
rs17083616	0.84[ASN][1000 genomes]
rs17083618	0.85[ASN][1000 genomes]
rs17083633	0.95[ASN][1000 genomes]
rs1925223	0.92[ASN][1000 genomes]
rs2071165	0.92[ASN][1000 genomes]
rs2071166	0.91[ASN][1000 genomes]
rs2892767	0.84[ASN][1000 genomes]
rs3763174	0.84[ASN][1000 genomes]
rs3805785	0.95[ASN][1000 genomes]
rs3805788	0.91[ASN][1000 genomes]
rs57887263	0.89[ASN][1000 genomes]
rs62427607	0.85[ASN][1000 genomes]
rs6911179	0.84[ASN][1000 genomes]
rs6917166	0.85[ASN][1000 genomes]
rs6932422	0.84[ASN][1000 genomes]
rs73532207	0.83[ASN][1000 genomes]
rs73532215	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73532226	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr6:121756200-121763600	Active TSS	Aorta	Aorta
4	chr6:121756200-121764200	Active TSS	Right Atrium	heart
5	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
6	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:121756600-121761600	Active TSS	Ovary	ovary
12	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
13	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:121756800-121761600	Active TSS	Right Ventricle	heart
16	chr6:121757400-121761400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:121759000-121761600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:121759000-121761600	Active TSS	Brain Anterior Caudate	brain
19	chr6:121759000-121762800	Weak transcription	Gastric	stomach
20	chr6:121759000-121763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:121759200-121761000	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:121759200-121761400	Active TSS	Brain Substantia Nigra	brain
23	chr6:121759400-121762600	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:121759600-121761200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:121759600-121762400	Weak transcription	Esophagus	oesophagus
26	chr6:121759600-121762400	Weak transcription	Lung	lung
27	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:121759800-121761000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:121759800-121761000	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:121759800-121761400	Active TSS	Brain Angular Gyrus	brain
31	chr6:121759800-121761600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:121759800-121761600	Active TSS	Fetal Heart	heart
33	chr6:121759800-121762800	Weak transcription	NHLF	lung
34	chr6:121759800-121763600	Weak transcription	Psoas Muscle	Psoas
35	chr6:121759800-121764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:121759800-121765000	Weak transcription	HSMM	muscle
37	chr6:121759800-121767600	Weak transcription	Fetal Intestine Small	intestine
38	chr6:121759800-121767600	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:121759800-121767600	Weak transcription	Fetal Stomach	stomach
40	chr6:121759800-121767800	Weak transcription	Placenta	Placenta
41	chr6:121759800-121768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
43	chr6:121760200-121761600	Flanking Active TSS	NH-A	brain
44	chr6:121760400-121761000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr6:121760400-121761200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:121760400-121761200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:121760400-121761400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:121760400-121761400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:121760400-121761400	Flanking Active TSS	A549	lung
50	chr6:121760400-121761400	Flanking Active TSS	HMEC	breast

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