Variant report

Variant	rs2892767
Chromosome Location	chr6:121749927-121749928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17052912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083515	0.84[ASN][1000 genomes]
rs17083518	0.90[ASN][1000 genomes]
rs17083522	0.93[ASN][1000 genomes]
rs17083533	0.94[ASN][1000 genomes]
rs17083616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083618	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083633	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs1925223	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2038838	0.84[ASN][1000 genomes]
rs2071165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2071166	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs3763174	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs3805785	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs3805786	0.84[ASN][1000 genomes]
rs3805788	0.91[ASN][1000 genomes]
rs62427607	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67144741	0.89[AFR][1000 genomes]
rs6901938	0.87[ASW][hapmap];0.87[GIH][hapmap];0.86[LWK][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs6911179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917166	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6932422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532207	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73532213	0.81[AFR][1000 genomes]
rs73532215	0.89[ASN][1000 genomes]
rs9490224	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv515656	chr6:121748542-121750153	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121748400-121751600	Weak transcription	A549	lung

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