Variant report

Variant	rs17083522
Chromosome Location	chr6:121727758-121727759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10499102	1.00[CEU][hapmap]
rs10499103	1.00[CEU][hapmap]
rs10499107	1.00[CEU][hapmap]
rs10499108	1.00[CEU][hapmap]
rs10499110	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17052912	0.93[ASN][1000 genomes]
rs17083302	1.00[CEU][hapmap]
rs17083356	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17083358	1.00[CEU][hapmap]
rs17083360	1.00[CEU][hapmap]
rs17083375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17083385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17083389	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17083397	1.00[CEU][hapmap]
rs17083405	1.00[CEU][hapmap]
rs17083417	1.00[CEU][hapmap]
rs17083420	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17083421	1.00[CEU][hapmap]
rs17083432	1.00[CEU][hapmap]
rs17083515	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17083518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17083616	0.93[ASN][1000 genomes]
rs17083618	0.92[ASN][1000 genomes]
rs17083633	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs1925223	0.85[ASN][1000 genomes]
rs2038838	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2071165	0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2071166	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2389416	0.84[AMR][1000 genomes]
rs2892767	0.93[ASN][1000 genomes]
rs3763174	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805785	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs3805788	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4144169	1.00[CEU][hapmap]
rs41488349	0.97[AMR][1000 genomes]
rs4580906	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4585597	1.00[CEU][hapmap]
rs4945683	1.00[CEU][hapmap]
rs4946555	1.00[CEU][hapmap]
rs4946556	1.00[CEU][hapmap]
rs4946557	1.00[CEU][hapmap]
rs4946560	1.00[CEU][hapmap]
rs4946566	1.00[ASW][hapmap]
rs4946567	1.00[ASW][hapmap]
rs62427607	0.92[ASN][1000 genomes]
rs6911179	0.93[ASN][1000 genomes]
rs6917166	0.92[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6932422	0.93[ASN][1000 genomes]
rs73532207	0.90[ASN][1000 genomes]
rs73532215	0.82[ASN][1000 genomes]
rs9490224	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121727400-121731600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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