Variant report

Variant	rs41488349
Chromosome Location	chr6:121719547-121719548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17083302	1.00[AFR][1000 genomes]
rs17083356	1.00[ASW][hapmap]
rs17083358	1.00[AFR][1000 genomes]
rs17083375	1.00[ASW][hapmap]
rs17083385	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17083389	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17083397	1.00[AFR][1000 genomes]
rs17083432	1.00[AFR][1000 genomes]
rs17083515	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17083518	0.97[AMR][1000 genomes]
rs17083522	0.97[AMR][1000 genomes]
rs17083533	0.97[AMR][1000 genomes]
rs2038838	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2389416	0.81[AMR][1000 genomes]
rs35710769	1.00[AFR][1000 genomes]
rs4946566	1.00[ASW][hapmap]
rs4946567	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717000-121720200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:121717000-121722000	Enhancers	Fetal Intestine Large	intestine
3	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121718000-121720000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:121719000-121722200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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