Variant report

Variant	rs3805788
Chromosome Location	chr6:121757890-121757891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17052912	0.91[ASN][1000 genomes]
rs17083515	0.91[EUR][1000 genomes]
rs17083518	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17083522	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083533	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17083616	0.91[ASN][1000 genomes]
rs17083618	0.92[ASN][1000 genomes]
rs17083633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1925223	0.99[ASN][1000 genomes]
rs2038838	0.91[EUR][1000 genomes]
rs2071165	0.99[ASN][1000 genomes]
rs2071166	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892767	0.91[ASN][1000 genomes]
rs3763174	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3805786	0.91[ASN][1000 genomes]
rs57887263	0.81[ASN][1000 genomes]
rs62427607	0.92[ASN][1000 genomes]
rs6911179	0.91[ASN][1000 genomes]
rs6917166	0.92[ASN][1000 genomes]
rs6932422	0.91[ASN][1000 genomes]
rs73532207	0.90[ASN][1000 genomes]
rs73532215	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121755600-121760000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:121756000-121758800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:121756200-121758600	Active TSS	Brain Anterior Caudate	brain
7	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:121756200-121763600	Active TSS	Aorta	Aorta
9	chr6:121756200-121764200	Active TSS	Right Atrium	heart
10	chr6:121756400-121758200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:121756400-121759200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121756400-121759400	Active TSS	Adipose Nuclei	Adipose
13	chr6:121756400-121760400	Active TSS	A549	lung
14	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
17	chr6:121756600-121758000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:121756600-121758200	Active TSS	Psoas Muscle	Psoas
19	chr6:121756600-121758200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
20	chr6:121756600-121758800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:121756600-121759000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:121756600-121759000	Active TSS	Osteobl	bone
23	chr6:121756600-121759200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:121756600-121759200	Active TSS	Fetal Kidney	kidney
25	chr6:121756600-121759200	Active TSS	HUVEC	blood vessel
26	chr6:121756600-121759400	Active TSS	Muscle Satellite Cultured Cells	--
27	chr6:121756600-121759400	Active TSS	Fetal Intestine Large	intestine
28	chr6:121756600-121759400	Active TSS	Fetal Intestine Small	intestine
29	chr6:121756600-121759400	Active TSS	Fetal Lung	lung
30	chr6:121756600-121759400	Active TSS	HSMM	muscle
31	chr6:121756600-121759600	Active TSS	Brain Germinal Matrix	brain
32	chr6:121756600-121759800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:121756600-121759800	Active TSS	Placenta Amnion	Placenta Amnion
34	chr6:121756600-121760200	Active TSS	NH-A	brain
35	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
38	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
41	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:121756600-121761600	Active TSS	Ovary	ovary
44	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
45	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:121756800-121758600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr6:121756800-121758800	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr6:121756800-121759200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:121756800-121759200	Active TSS	Duodenum Mucosa	Duodenum

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