Variant report

Variant	rs57887263
Chromosome Location	chr6:121760289-121760290
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11759917	0.80[AFR][1000 genomes]
rs17083633	0.86[ASN][1000 genomes]
rs1925223	0.80[ASN][1000 genomes]
rs2071165	0.80[ASN][1000 genomes]
rs2071166	0.81[ASN][1000 genomes]
rs3805785	0.86[ASN][1000 genomes]
rs3805786	0.89[ASN][1000 genomes]
rs3805788	0.81[ASN][1000 genomes]
rs73532215	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr6:121756200-121763600	Active TSS	Aorta	Aorta
6	chr6:121756200-121764200	Active TSS	Right Atrium	heart
7	chr6:121756400-121760400	Active TSS	A549	lung
8	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
11	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
14	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:121756600-121761600	Active TSS	Ovary	ovary
20	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
21	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:121756800-121760400	Active TSS	HMEC	breast
26	chr6:121756800-121761600	Active TSS	Right Ventricle	heart
27	chr6:121757400-121761400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:121758400-121760400	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:121758800-121760400	Active TSS	Fetal Muscle Trunk	muscle
30	chr6:121759000-121761600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:121759000-121761600	Active TSS	Brain Anterior Caudate	brain
32	chr6:121759000-121762800	Weak transcription	Gastric	stomach
33	chr6:121759000-121763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:121759200-121761000	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:121759200-121761400	Active TSS	Brain Substantia Nigra	brain
36	chr6:121759400-121760800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:121759400-121762600	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr6:121759600-121760400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:121759600-121760400	Active TSS	Osteobl	bone
40	chr6:121759600-121760600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:121759600-121760800	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:121759600-121761200	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr6:121759600-121762400	Weak transcription	Esophagus	oesophagus
44	chr6:121759600-121762400	Weak transcription	Lung	lung
45	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:121759800-121760400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:121759800-121760400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:121759800-121760400	Weak transcription	Fetal Intestine Large	intestine
49	chr6:121759800-121760400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:121759800-121760600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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