Variant report

Variant	rs11759917
Chromosome Location	chr6:121759439-121759440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121753097..121755980-chr6:121757909..121760037,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10456939	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10456940	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961755	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12197797	0.90[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17652897	1.00[CHB][hapmap]
rs57347370	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57887263	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121755600-121760000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:121756200-121763600	Active TSS	Aorta	Aorta
7	chr6:121756200-121764200	Active TSS	Right Atrium	heart
8	chr6:121756400-121760400	Active TSS	A549	lung
9	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
12	chr6:121756600-121759600	Active TSS	Brain Germinal Matrix	brain
13	chr6:121756600-121759800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:121756600-121759800	Active TSS	Placenta Amnion	Placenta Amnion
15	chr6:121756600-121760200	Active TSS	NH-A	brain
16	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
19	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:121756600-121761600	Active TSS	Ovary	ovary
25	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:121756800-121759800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:121756800-121759800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:121756800-121759800	Active TSS	Placenta	Placenta
31	chr6:121756800-121759800	Active TSS	Fetal Stomach	stomach
32	chr6:121756800-121759800	Active TSS	NHLF	lung
33	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:121756800-121760400	Active TSS	HMEC	breast
36	chr6:121756800-121761600	Active TSS	Right Ventricle	heart
37	chr6:121757000-121759600	Bivalent/Poised TSS	Fetal Thymus	thymus
38	chr6:121757400-121761400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:121757600-121759600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:121757600-121759600	Active TSS	Esophagus	oesophagus
41	chr6:121757600-121759600	Active TSS	Lung	lung
42	chr6:121757600-121759800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
43	chr6:121758400-121760400	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr6:121758600-121759600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr6:121758800-121759600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
46	chr6:121758800-121759800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:121758800-121760400	Active TSS	Fetal Muscle Trunk	muscle
48	chr6:121759000-121759600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:121759000-121759600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
50	chr6:121759000-121759600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links