Variant report

Variant	rs11961755
Chromosome Location	chr6:121766286-121766287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10456939	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759917	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12197797	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57347370	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:121759800-121767600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:121759800-121767600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:121759800-121767600	Weak transcription	Fetal Stomach	stomach
5	chr6:121759800-121767800	Weak transcription	Placenta	Placenta
6	chr6:121759800-121768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
8	chr6:121760400-121767200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:121761000-121767800	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:121761000-121768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:121761600-121767600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:121761600-121768200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:121762400-121768200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:121762400-121768200	Enhancers	HMEC	breast
15	chr6:121762800-121767000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:121763000-121766600	Genic enhancers	H1 Cell Line	embryonic stem cell
17	chr6:121763000-121768000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:121763000-121768000	Weak transcription	Lung	lung
19	chr6:121763000-121768000	Weak transcription	NHLF	lung
20	chr6:121763000-121768400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:121763200-121768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:121763800-121767800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:121764000-121767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:121764200-121766400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:121764200-121766400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:121764200-121767600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:121764200-121767600	Weak transcription	Adipose Nuclei	Adipose
28	chr6:121764200-121767600	Weak transcription	Right Atrium	heart
29	chr6:121764200-121768000	Weak transcription	Esophagus	oesophagus
30	chr6:121764200-121768000	Weak transcription	Left Ventricle	heart
31	chr6:121764200-121771800	Weak transcription	Brain Anterior Caudate	brain
32	chr6:121764200-121775200	Weak transcription	Psoas Muscle	Psoas
33	chr6:121764400-121767400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:121764600-121769000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:121764600-121771600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:121765400-121766400	Transcr. at gene 5' and 3'	Osteobl	bone
37	chr6:121765400-121767000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:121765600-121766600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:121765600-121766800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:121765600-121767200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:121765600-121767600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:121765600-121768000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:121765600-121768000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:121765600-121768000	Weak transcription	Ovary	ovary
45	chr6:121765600-121769800	Weak transcription	A549	lung
46	chr6:121765600-121771400	Strong transcription	NHDF-Ad	bronchial
47	chr6:121765600-121771600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:121765800-121767000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:121765800-121767000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:121765800-121767000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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