Variant report

Variant	rs57347370
Chromosome Location	chr6:121762088-121762089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10456939	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10456940	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11759917	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11961755	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12197797	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121756200-121763600	Active TSS	Aorta	Aorta
2	chr6:121756200-121764200	Active TSS	Right Atrium	heart
3	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
4	chr6:121759000-121762800	Weak transcription	Gastric	stomach
5	chr6:121759000-121763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:121759400-121762600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:121759600-121762400	Weak transcription	Esophagus	oesophagus
8	chr6:121759600-121762400	Weak transcription	Lung	lung
9	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:121759800-121762800	Weak transcription	NHLF	lung
11	chr6:121759800-121763600	Weak transcription	Psoas Muscle	Psoas
12	chr6:121759800-121764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:121759800-121765000	Weak transcription	HSMM	muscle
14	chr6:121759800-121767600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:121759800-121767600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:121759800-121767600	Weak transcription	Fetal Stomach	stomach
17	chr6:121759800-121767800	Weak transcription	Placenta	Placenta
18	chr6:121759800-121768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
20	chr6:121760400-121763400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:121760400-121767200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:121760600-121764200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:121761000-121762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:121761000-121765200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:121761000-121767800	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:121761000-121768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:121761200-121762800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:121761200-121764800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:121761400-121762200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:121761400-121762400	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:121761400-121762400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:121761400-121762400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:121761400-121762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:121761400-121762400	Weak transcription	Brain Angular Gyrus	brain
35	chr6:121761400-121762400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:121761400-121762400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:121761400-121762400	Weak transcription	HMEC	breast
38	chr6:121761400-121762400	Weak transcription	NHEK	skin
39	chr6:121761400-121762600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:121761400-121762600	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:121761400-121762600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:121761400-121762600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:121761400-121762600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:121761400-121762600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:121761400-121762800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:121761400-121762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:121761400-121762800	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:121761400-121763600	Weak transcription	Brain Substantia Nigra	brain
49	chr6:121761600-121762400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:121761600-121762400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links