Variant report

Variant	rs10456940
Chromosome Location	chr6:121764258-121764259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10456939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759917	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11961755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197797	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57347370	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:121759800-121764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:121759800-121765000	Weak transcription	HSMM	muscle
4	chr6:121759800-121767600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:121759800-121767600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:121759800-121767600	Weak transcription	Fetal Stomach	stomach
7	chr6:121759800-121767800	Weak transcription	Placenta	Placenta
8	chr6:121759800-121768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
10	chr6:121760400-121767200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:121761000-121765200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:121761000-121767800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:121761000-121768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:121761200-121764800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:121761600-121767600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:121761600-121768200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:121761800-121764600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:121762400-121765600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
19	chr6:121762400-121765800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
20	chr6:121762400-121765800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:121762400-121766000	Transcr. at gene 5' and 3'	Fetal Heart	heart
22	chr6:121762400-121768200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:121762400-121768200	Enhancers	HMEC	breast
24	chr6:121762600-121765600	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
25	chr6:121762600-121765800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:121762800-121764400	Enhancers	Fetal Lung	lung
27	chr6:121762800-121764600	Active TSS	Brain Hippocampus Middle	brain
28	chr6:121762800-121767000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:121763000-121764600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:121763000-121765200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:121763000-121765600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:121763000-121766000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:121763000-121766000	Enhancers	NHEK	skin
34	chr6:121763000-121766600	Genic enhancers	H1 Cell Line	embryonic stem cell
35	chr6:121763000-121768000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:121763000-121768000	Weak transcription	Lung	lung
37	chr6:121763000-121768000	Weak transcription	NHLF	lung
38	chr6:121763000-121768400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:121763200-121764600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr6:121763200-121765200	Genic enhancers	HUVEC	blood vessel
41	chr6:121763200-121765600	Enhancers	A549	lung
42	chr6:121763200-121768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:121763600-121764600	Active TSS	Brain Substantia Nigra	brain
44	chr6:121763600-121765800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:121763600-121766000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
46	chr6:121763800-121764400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:121763800-121767800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:121764000-121764400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
49	chr6:121764000-121765200	Enhancers	Stomach Smooth Muscle	stomach
50	chr6:121764000-121765400	Active TSS	Aorta	Aorta

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