Variant report

Variant	rs17083633
Chromosome Location	chr6:121762904-121762905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499102	1.00[CEU][hapmap]
rs10499103	1.00[CEU][hapmap]
rs10499107	1.00[CEU][hapmap]
rs10499108	1.00[CEU][hapmap]
rs10499110	1.00[CEU][hapmap]
rs17083356	1.00[CEU][hapmap]
rs17083358	1.00[CEU][hapmap]
rs17083360	1.00[CEU][hapmap]
rs17083375	1.00[CEU][hapmap]
rs17083385	1.00[CEU][hapmap]
rs17083389	1.00[CEU][hapmap]
rs17083397	1.00[CEU][hapmap]
rs17083405	1.00[CEU][hapmap]
rs17083417	1.00[CEU][hapmap]
rs17083420	1.00[CEU][hapmap]
rs17083421	1.00[CEU][hapmap]
rs17083432	1.00[CEU][hapmap]
rs17083515	0.91[EUR][1000 genomes]
rs17083518	0.91[EUR][1000 genomes]
rs17083522	0.91[EUR][1000 genomes]
rs17083533	0.91[EUR][1000 genomes]
rs17083618	0.80[ASN][1000 genomes]
rs1925223	0.87[ASN][1000 genomes]
rs2038838	0.91[EUR][1000 genomes]
rs2071165	0.93[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2071166	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35296339	1.00[AFR][1000 genomes]
rs3763174	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805786	0.95[ASN][1000 genomes]
rs3805788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4144169	1.00[CEU][hapmap]
rs4580906	1.00[CEU][hapmap]
rs4585597	1.00[CEU][hapmap]
rs4945683	1.00[CEU][hapmap]
rs4946555	1.00[CEU][hapmap]
rs4946556	1.00[CEU][hapmap]
rs4946557	1.00[CEU][hapmap]
rs4946560	1.00[CEU][hapmap]
rs57887263	0.86[ASN][1000 genomes]
rs62427607	0.80[ASN][1000 genomes]
rs6917166	0.92[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs73532215	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121756200-121763600	Active TSS	Aorta	Aorta
2	chr6:121756200-121764200	Active TSS	Right Atrium	heart
3	chr6:121759000-121763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:121759800-121763600	Weak transcription	Psoas Muscle	Psoas
6	chr6:121759800-121764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:121759800-121765000	Weak transcription	HSMM	muscle
8	chr6:121759800-121767600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:121759800-121767600	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:121759800-121767600	Weak transcription	Fetal Stomach	stomach
11	chr6:121759800-121767800	Weak transcription	Placenta	Placenta
12	chr6:121759800-121768000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
14	chr6:121760400-121763400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:121760400-121767200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:121760600-121764200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:121761000-121765200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:121761000-121767800	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:121761000-121768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:121761200-121764800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:121761400-121763600	Weak transcription	Brain Substantia Nigra	brain
22	chr6:121761600-121763000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:121761600-121763800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:121761600-121767600	Weak transcription	Fetal Intestine Large	intestine
25	chr6:121761600-121768200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:121761800-121764600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:121762400-121763000	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:121762400-121763000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:121762400-121763000	Active TSS	Brain Angular Gyrus	brain
30	chr6:121762400-121763000	Active TSS	Brain Cingulate Gyrus	brain
31	chr6:121762400-121763000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:121762400-121763000	Enhancers	Esophagus	oesophagus
33	chr6:121762400-121763000	Transcr. at gene 5' and 3'	Left Ventricle	heart
34	chr6:121762400-121763000	Enhancers	Lung	lung
35	chr6:121762400-121763000	Genic enhancers	NHEK	skin
36	chr6:121762400-121763200	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:121762400-121763600	Active TSS	Right Ventricle	heart
38	chr6:121762400-121764200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:121762400-121764200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
40	chr6:121762400-121764200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:121762400-121764200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
42	chr6:121762400-121764200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:121762400-121765600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
44	chr6:121762400-121765800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
45	chr6:121762400-121765800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:121762400-121766000	Transcr. at gene 5' and 3'	Fetal Heart	heart
47	chr6:121762400-121768200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:121762400-121768200	Enhancers	HMEC	breast
49	chr6:121762600-121763000	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
50	chr6:121762600-121763000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell

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