Variant report

Variant	rs12529379
Chromosome Location	chr6:150656390-150656391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150656170..150657781-chr6:150675338..150677174,2	K562	blood:
2	chr6:150391874..150392906-chr6:150655937..150656926,3	MCF-7	breast:
3	chr6:150401151..150402465-chr6:150656027..150656922,6	MCF-7	breast:
4	chr6:150392325..150392932-chr6:150655903..150657072,4	K562	blood:
5	chr6:150401082..150403253-chr6:150656281..150658165,2	MCF-7	breast:
6	chr6:150401548..150402447-chr6:150655810..150657501,10	K562	blood:
7	chr6:150401003..150402693-chr6:150655609..150656984,12	MCF-7	breast:
8	chr6:150652538..150654492-chr6:150655790..150657493,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12524819	0.84[ASN][1000 genomes]
rs12527319	0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12527376	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869889	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869892	0.84[ASN][1000 genomes]
rs4869894	0.84[ASN][1000 genomes]
rs4870471	0.83[ASN][1000 genomes]
rs4870474	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870481	0.91[ASN][1000 genomes]
rs59447435	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61345691	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779957	0.83[ASN][1000 genomes]
rs73779967	0.82[AFR][1000 genomes]
rs946418	0.81[AFR][1000 genomes]
rs963567	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3443867	chr6:150651959-150656557	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150649000-150656600	Weak transcription	Right Atrium	heart
3	chr6:150654200-150657200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150655000-150657400	Weak transcription	Stomach Mucosa	stomach
5	chr6:150655600-150657800	Enhancers	K562	blood
6	chr6:150656000-150656600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150656000-150658600	Enhancers	HMEC	breast
8	chr6:150656200-150657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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