Variant report

Variant	rs946418
Chromosome Location	chr6:150658328-150658329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12529379	0.81[AFR][1000 genomes]
rs2206212	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs594503	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61345691	0.87[AFR][1000 genomes]
rs634776	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs635178	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73779967	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs954291	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150656000-150658600	Enhancers	HMEC	breast
3	chr6:150656400-150658600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:150656400-150658600	Enhancers	NHEK	skin
5	chr6:150657000-150658600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150657200-150658400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150657200-150658600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150657200-150658600	Enhancers	NH-A	brain
9	chr6:150657800-150659200	Weak transcription	K562	blood
10	chr6:150658000-150662200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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