Variant report

Variant	rs2206212
Chromosome Location	chr6:150676383-150676384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12211979	1.00[CHB][hapmap]
rs594503	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620102	1.00[CHB][hapmap]
rs634776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635178	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs657961	1.00[CHB][hapmap]
rs667815	1.00[CHB][hapmap]
rs674414	1.00[CHB][hapmap]
rs678182	1.00[CHB][hapmap]
rs683620	1.00[CHB][hapmap]
rs9397289	1.00[CHB][hapmap]
rs946418	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9480329	1.00[CHB][hapmap]
rs954291	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150674400-150676600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:150675800-150677200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:150675800-150677200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:150675800-150677600	Enhancers	Ovary	ovary
5	chr6:150676000-150676600	Enhancers	Fetal Kidney	kidney
6	chr6:150676000-150676600	Enhancers	Fetal Lung	lung
7	chr6:150676000-150676800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150676000-150676800	Enhancers	NH-A	brain
9	chr6:150676000-150677000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:150676000-150677000	Enhancers	Osteobl	bone
11	chr6:150676000-150677200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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