Variant report
| Variant | rs667815 |
|---|---|
| Chromosome Location | chr6:150681656-150681657 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150679855..150682122-chr6:150688615..150690541,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000009765 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12193715 | 0.87[ASN][1000 genomes] |
| rs12198459 | 0.87[ASN][1000 genomes] |
| rs12200125 | 0.87[ASN][1000 genomes] |
| rs12203809 | 0.87[ASN][1000 genomes] |
| rs12211677 | 0.87[ASN][1000 genomes] |
| rs12211918 | 0.87[ASN][1000 genomes] |
| rs12211979 | 1.00[CHB][hapmap];0.93[GIH][hapmap];0.87[ASN][1000 genomes] |
| rs1768283 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55977741 | 0.87[ASN][1000 genomes] |
| rs602842 | 0.82[CEU][hapmap] |
| rs620102 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs632750 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs654476 | 0.87[CEU][hapmap] |
| rs655363 | 0.83[EUR][1000 genomes] |
| rs657961 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs660467 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs671675 | 0.82[CEU][hapmap] |
| rs674414 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs678182 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs683150 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs683620 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73001817 | 1.00[ASN][1000 genomes] |
| rs9397289 | 1.00[CHB][hapmap] |
| rs9478711 | 0.87[ASN][1000 genomes] |
| rs9480324 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9480328 | 0.87[ASN][1000 genomes] |
| rs9480329 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830843 | chr6:150517411-150691173 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2763602 | chr6:150581193-150720666 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs667815 | LRP11 | cis | cerebellum | SCAN |
| rs667815 | NOX4 | trans | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
