Variant report

Variant	rs12211918
Chromosome Location	chr6:150698839-150698840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12193715	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200125	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203809	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211677	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211979	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768283	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55977741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620102	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632750	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655363	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs660467	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667815	0.87[ASN][1000 genomes]
rs674414	1.00[ASN][1000 genomes]
rs678182	1.00[ASN][1000 genomes]
rs683150	0.87[ASN][1000 genomes]
rs683620	0.87[ASN][1000 genomes]
rs73001817	0.87[ASN][1000 genomes]
rs9478711	1.00[ASN][1000 genomes]
rs9480324	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480329	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691600-150700200	Weak transcription	Lung	lung
2	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:150697200-150699200	Enhancers	Fetal Kidney	kidney
5	chr6:150697800-150699000	Enhancers	Liver	Liver
6	chr6:150698000-150699000	Enhancers	Fetal Heart	heart
7	chr6:150698000-150699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:150698000-150699200	Enhancers	Fetal Intestine Small	intestine
9	chr6:150698200-150699000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:150698200-150699000	Enhancers	Brain Substantia Nigra	brain
11	chr6:150698200-150699000	Enhancers	Osteobl	bone
12	chr6:150698200-150699200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:150698200-150699200	Enhancers	Brain Hippocampus Middle	brain
14	chr6:150698400-150699000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:150698400-150699000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:150698400-150699000	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr6:150698400-150699000	Enhancers	Fetal Lung	lung
18	chr6:150698400-150699000	Flanking Active TSS	HepG2	liver
19	chr6:150698400-150699200	Enhancers	Fetal Intestine Large	intestine
20	chr6:150698400-150699200	Enhancers	K562	blood
21	chr6:150698600-150699000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:150698600-150699000	Enhancers	NHDF-Ad	bronchial
23	chr6:150698600-150699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:150698800-150700000	Weak transcription	Pancreas	Pancrea

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