Variant report

Variant	rs9480328
Chromosome Location	chr6:150697757-150697758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150688621..150691122-chr6:150696255..150698510,2	K562	blood:

Variant related genes	Relation type
ENSG00000009765	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12193715	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198459	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200125	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203809	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211979	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768283	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55977741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620102	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632750	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655363	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs660467	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667815	0.87[ASN][1000 genomes]
rs674414	1.00[ASN][1000 genomes]
rs678182	1.00[ASN][1000 genomes]
rs683150	0.87[ASN][1000 genomes]
rs683620	0.87[ASN][1000 genomes]
rs73001817	0.87[ASN][1000 genomes]
rs9478711	1.00[ASN][1000 genomes]
rs9480324	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480329	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:150693400-150698000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:150694800-150698200	Weak transcription	Right Atrium	heart
9	chr6:150694800-150698400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:150694800-150698400	Weak transcription	Fetal Lung	lung
11	chr6:150695000-150698200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:150695000-150698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:150695200-150698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:150695400-150698200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
16	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:150696000-150698400	Weak transcription	Ovary	ovary
18	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:150697200-150699200	Enhancers	Fetal Kidney	kidney
20	chr6:150697400-150697800	Weak transcription	Liver	Liver

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