Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12193715	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200125	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203809	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211677	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211918	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211979	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768283	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55977741	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620102	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632750	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655363	0.82[EUR][1000 genomes]
rs657961	0.87[AFR][1000 genomes]
rs660467	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667815	0.87[ASN][1000 genomes]
rs674414	1.00[ASN][1000 genomes]
rs678182	1.00[ASN][1000 genomes]
rs683150	0.87[ASN][1000 genomes]
rs683620	0.87[ASN][1000 genomes]
rs73001817	0.87[ASN][1000 genomes]
rs9478711	1.00[ASN][1000 genomes]
rs9480324	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480328	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480329	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691600-150700200	Weak transcription	Lung	lung
2	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:150696800-150699200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:150697200-150699200	Enhancers	Fetal Kidney	kidney
5	chr6:150698000-150699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:150698000-150699200	Enhancers	Fetal Intestine Small	intestine
7	chr6:150698200-150699200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:150698200-150699200	Enhancers	Brain Hippocampus Middle	brain
9	chr6:150698400-150699200	Enhancers	Fetal Intestine Large	intestine
10	chr6:150698400-150699200	Enhancers	K562	blood
11	chr6:150698600-150699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:150698800-150700000	Weak transcription	Pancreas	Pancrea
13	chr6:150699000-150700000	Weak transcription	NHDF-Ad	bronchial
14	chr6:150699000-150700400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:150699000-150701600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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