Variant report

Variant	rs12530169
Chromosome Location	chr6:118812237-118812238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118807810..118810020-chr6:118811825..118813344,2	K562	blood:
2	chr6:118807029..118809570-chr6:118811844..118815669,3	K562	blood:

Extended variants
information (count: 149 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1016095	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10457334	0.82[ASN][1000 genomes]
rs10457344	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs10484287	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1051429	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10872163	0.80[ASN][1000 genomes]
rs11153735	0.80[ASN][1000 genomes]
rs11153737	0.80[ASN][1000 genomes]
rs11153738	0.80[ASN][1000 genomes]
rs11153754	0.83[ASN][1000 genomes]
rs11153761	0.85[CHB][hapmap]
rs11754973	0.83[ASN][1000 genomes]
rs11756983	0.83[ASN][1000 genomes]
rs12196194	0.85[ASN][1000 genomes]
rs12204456	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs12526557	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1344249	0.82[ASN][1000 genomes]
rs1547326	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs17080423	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1891712	0.88[GIH][hapmap]
rs1936059	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2157569	0.83[ASN][1000 genomes]
rs2181513	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs2187945	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2213858	0.83[ASN][1000 genomes]
rs2356178	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2356179	0.80[ASN][1000 genomes]
rs2356180	0.80[ASN][1000 genomes]
rs2356182	0.82[ASN][1000 genomes]
rs2356184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356493	0.83[ASN][1000 genomes]
rs2356502	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap]
rs25421	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs25423	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs3734382	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap]
rs3951041	0.80[ASN][1000 genomes]
rs4027728	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap]
rs4027875	0.80[ASN][1000 genomes]
rs4027876	0.80[ASN][1000 genomes]
rs4027878	0.80[ASN][1000 genomes]
rs4027881	0.80[ASN][1000 genomes]
rs4027883	0.80[ASN][1000 genomes]
rs422312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4412243	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4502975	0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4568488	0.80[ASN][1000 genomes]
rs482910	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs485416	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs492562	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946343	0.95[ASN][1000 genomes]
rs4946349	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap]
rs516212	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516463	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs541442	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55868726	0.82[ASN][1000 genomes]
rs6569022	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs6569023	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6904968	0.80[ASN][1000 genomes]
rs6911599	1.00[YRI][hapmap]
rs6919887	0.81[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.82[ASN][1000 genomes]
rs6923888	0.80[ASN][1000 genomes]
rs6929390	0.81[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs763255	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs7740922	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7741644	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7742696	0.95[ASN][1000 genomes]
rs7745692	0.80[ASN][1000 genomes]
rs7749208	0.81[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7749694	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7754293	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7756973	0.80[ASN][1000 genomes]
rs7757337	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7757407	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs7758933	0.80[ASN][1000 genomes]
rs7759088	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7761717	0.83[ASN][1000 genomes]
rs7761996	0.83[ASN][1000 genomes]
rs7762990	0.84[CHB][hapmap]
rs7766732	0.80[ASN][1000 genomes]
rs7766907	0.80[ASN][1000 genomes]
rs7769937	0.80[ASN][1000 genomes]
rs9320653	0.80[ASN][1000 genomes]
rs933257	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372506	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374733	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374735	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374736	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9387586	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401073	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401081	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9481807	0.82[ASN][1000 genomes]
rs9481815	0.80[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9481819	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9481840	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489368	0.80[ASN][1000 genomes]
rs9489373	0.80[ASN][1000 genomes]
rs9489376	0.80[ASN][1000 genomes]
rs9489377	0.80[ASN][1000 genomes]
rs9489378	0.80[ASN][1000 genomes]
rs9489401	0.82[ASN][1000 genomes]
rs9489403	0.84[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9489406	0.83[ASN][1000 genomes]
rs9489414	0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9489417	0.85[ASN][1000 genomes]
rs9489419	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9489420	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9489421	0.82[ASN][1000 genomes]
rs9489424	0.81[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9489425	0.83[ASN][1000 genomes]
rs9489432	0.81[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs9489437	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs9489438	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489439	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489446	0.84[JPT][hapmap]
rs9489448	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489449	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489456	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs9489461	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489478	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9489487	0.88[GIH][hapmap]
rs9689896	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs9717286	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv432960	chr6:118723307-118826307	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv525179	chr6:118726243-118876092	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv1019357	chr6:118731468-118860705	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv464027	chr6:118768150-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
20	nsv604557	chr6:118768150-118856822	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
21	nsv464029	chr6:118768150-118861263	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
22	nsv604558	chr6:118768150-118861263	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
23	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
25	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
27	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12530169	SSXP10	cis	Artery Tibial	GTEx
rs12530169	RFX6	cis	cerebellum	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118784600-118827600	Weak transcription	Esophagus	oesophagus
2	chr6:118785000-118813400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:118785000-118816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:118790400-118816800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:118791000-118816400	Weak transcription	Pancreas	Pancrea
6	chr6:118791000-118816800	Weak transcription	HUVEC	blood vessel
7	chr6:118791000-118846000	Weak transcription	Gastric	stomach
8	chr6:118797800-118817000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:118800600-118816200	Weak transcription	HMEC	breast
10	chr6:118807400-118812600	Strong transcription	HSMM	muscle
11	chr6:118807400-118842600	Weak transcription	NHLF	lung
12	chr6:118808200-118813000	Strong transcription	Placenta	Placenta
13	chr6:118808200-118814200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:118808400-118812400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:118808800-118813200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr6:118809000-118816200	Weak transcription	Fetal Kidney	kidney
17	chr6:118809200-118815400	Weak transcription	Aorta	Aorta
18	chr6:118809200-118816400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:118809200-118822200	Weak transcription	Right Ventricle	heart
20	chr6:118809200-118822400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:118809200-118825200	Weak transcription	Lung	lung
22	chr6:118809400-118813000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:118809400-118814000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:118810000-118845800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:118810200-118813000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:118810200-118815800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:118810200-118816800	Weak transcription	Brain Anterior Caudate	brain
28	chr6:118810200-118817400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:118810200-118821800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:118810400-118812400	Strong transcription	Left Ventricle	heart
31	chr6:118810400-118813200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:118810400-118814600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:118810400-118815400	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:118810400-118819000	Strong transcription	Fetal Thymus	thymus
35	chr6:118810400-118821200	Weak transcription	Fetal Stomach	stomach
36	chr6:118810600-118813200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:118810800-118812400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:118810800-118814200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:118810800-118814200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:118810800-118814600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:118810800-118816400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:118810800-118816800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:118810800-118817000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:118810800-118825200	Weak transcription	HSMMtube	muscle
45	chr6:118810800-118825400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:118810800-118827400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:118810800-118827400	Weak transcription	Small Intestine	intestine
48	chr6:118810800-118827600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:118810800-118827800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:118811000-118813200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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