Variant report

Variant	rs12532172
Chromosome Location	chr7:12927377-12927378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10233379	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10235332	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10237365	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10950417	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10950418	1.00[ASN][1000 genomes]
rs10950419	1.00[ASN][1000 genomes]
rs11495996	1.00[ASN][1000 genomes]
rs12155420	1.00[ASN][1000 genomes]
rs12216561	1.00[ASN][1000 genomes]
rs12530804	1.00[ASN][1000 genomes]
rs12531011	1.00[ASN][1000 genomes]
rs12531228	1.00[ASN][1000 genomes]
rs12531814	0.91[AMR][1000 genomes]
rs12532245	0.90[EUR][1000 genomes]
rs12533247	1.00[ASN][1000 genomes]
rs12533314	1.00[ASN][1000 genomes]
rs12533912	1.00[ASN][1000 genomes]
rs12534712	1.00[ASN][1000 genomes]
rs12535230	1.00[ASN][1000 genomes]
rs12535869	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12536932	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538097	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538194	1.00[ASN][1000 genomes]
rs12538792	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539313	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539387	1.00[ASN][1000 genomes]
rs12539416	1.00[ASN][1000 genomes]
rs12540042	1.00[ASN][1000 genomes]
rs12699417	1.00[ASN][1000 genomes]
rs12699419	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs12699426	0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699432	1.00[ASN][1000 genomes]
rs12699433	1.00[ASN][1000 genomes]
rs13224587	1.00[ASN][1000 genomes]
rs13225356	1.00[ASN][1000 genomes]
rs13227946	1.00[ASN][1000 genomes]
rs13228110	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13228635	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13232299	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13233019	1.00[ASN][1000 genomes]
rs13233170	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233911	1.00[ASN][1000 genomes]
rs13235201	1.00[ASN][1000 genomes]
rs13236001	1.00[ASN][1000 genomes]
rs13236020	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238922	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13244444	1.00[ASN][1000 genomes]
rs2191263	0.86[EUR][1000 genomes]
rs2191264	0.85[EUR][1000 genomes]
rs28504348	0.81[AMR][1000 genomes]
rs34057597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34107937	1.00[ASN][1000 genomes]
rs34269223	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34338066	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34488685	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34529424	1.00[ASN][1000 genomes]
rs34591294	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34755449	1.00[ASN][1000 genomes]
rs34809518	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34904008	1.00[ASN][1000 genomes]
rs34928291	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971219	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35003906	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35181098	1.00[ASN][1000 genomes]
rs35193720	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290407	0.87[AMR][1000 genomes]
rs35616205	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35769393	1.00[ASN][1000 genomes]
rs35859074	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35867430	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35917995	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35942853	1.00[ASN][1000 genomes]
rs35966640	1.00[ASN][1000 genomes]
rs55864529	1.00[ASN][1000 genomes]
rs55943442	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62450583	1.00[ASN][1000 genomes]
rs6954306	1.00[ASN][1000 genomes]
rs71536902	1.00[ASN][1000 genomes]
rs71538805	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71538808	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9647958	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv464382	chr7:12907178-12972685	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv606237	chr7:12907178-12972685	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv464384	chr7:12907178-13077065	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv606238	chr7:12907178-13077065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2763624	chr7:12917029-12951820	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12922200-12928600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:12922200-12934000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:12925200-12928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:12925200-12928600	Weak transcription	Osteobl	bone
5	chr7:12925200-12928800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:12925200-12928800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:12925200-12928800	Weak transcription	HSMM	muscle
8	chr7:12925400-12928600	Weak transcription	A549	lung
9	chr7:12925400-12928800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links