Variant report

Variant	rs35290407
Chromosome Location	chr7:12858576-12858577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12853166..12855784-chr7:12857906..12859818,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10233379	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10235332	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10237365	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10950417	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950418	0.95[EUR][1000 genomes]
rs10950419	0.96[EUR][1000 genomes]
rs12155420	0.94[EUR][1000 genomes]
rs12531011	0.91[EUR][1000 genomes]
rs12531228	0.96[EUR][1000 genomes]
rs12531814	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532172	0.87[AMR][1000 genomes]
rs12533247	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12533314	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12533912	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12533952	0.86[EUR][1000 genomes]
rs12534712	0.96[EUR][1000 genomes]
rs12535230	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12535869	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12536932	0.85[EUR][1000 genomes]
rs12538097	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12538194	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12538763	0.96[EUR][1000 genomes]
rs12538792	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12539313	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12539387	0.96[EUR][1000 genomes]
rs12699416	0.81[AMR][1000 genomes]
rs12699417	0.94[EUR][1000 genomes]
rs12699419	0.97[EUR][1000 genomes]
rs12699421	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699422	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699426	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13222073	0.84[EUR][1000 genomes]
rs13222475	0.84[EUR][1000 genomes]
rs13224587	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13225356	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13225358	0.84[EUR][1000 genomes]
rs13228110	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13228635	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13232299	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13233019	0.95[EUR][1000 genomes]
rs13233170	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13233911	0.96[EUR][1000 genomes]
rs13236020	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13238922	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13244444	0.94[EUR][1000 genomes]
rs2191259	0.88[AFR][1000 genomes]
rs28504348	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057597	0.85[EUR][1000 genomes]
rs34107937	0.96[EUR][1000 genomes]
rs34269223	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34338066	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34488685	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34591294	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34755449	0.87[EUR][1000 genomes]
rs34809518	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34904008	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34928291	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34971219	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35003906	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35181098	0.94[EUR][1000 genomes]
rs35193720	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35464195	0.84[EUR][1000 genomes]
rs35616205	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35859074	0.93[AMR][1000 genomes]
rs35867430	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35917995	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35988890	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36003929	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36091229	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55864529	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62445836	0.83[EUR][1000 genomes]
rs6954306	0.96[EUR][1000 genomes]
rs6954419	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71536902	0.81[EUR][1000 genomes]
rs71538805	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9647958	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9648162	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv830908	chr7:12695007-12870475	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	esv2422346	chr7:12739291-12883550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1027806	chr7:12842708-12875714	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv1016775	chr7:12845004-12865643	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12854800-12859200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:12854800-12867200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:12855800-12858800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:12857200-12859800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:12857400-12859800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:12857600-12858800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:12857600-12858800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:12857600-12858800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:12857600-12858800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:12857600-12858800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:12857600-12859800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:12857600-12860800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:12857800-12858800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:12857800-12858800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:12858400-12862200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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