Variant report

Variant	rs12532692
Chromosome Location	chr7:13874028-13874029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2190317	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv433032	chr7:13792450-13911001	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv887697	chr7:13841798-13899446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv887699	chr7:13868601-13899446	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1015919	chr7:13873800-13908250	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13873000-13874200	Enhancers	Fetal Brain Male	brain
2	chr7:13873000-13874400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:13873000-13875200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:13873200-13876000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:13873200-13876600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:13873200-13877000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:13873400-13874800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:13873400-13875400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:13873400-13875400	Enhancers	Fetal Heart	heart
10	chr7:13873400-13875600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:13873400-13877400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:13873600-13874400	Enhancers	Fetal Lung	lung
13	chr7:13873600-13875400	Enhancers	HSMMtube	muscle
14	chr7:13873600-13875600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:13873600-13876000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:13873600-13876600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:13873600-13877000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:13873800-13874200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:13873800-13874200	Enhancers	Fetal Muscle Leg	muscle
20	chr7:13873800-13874200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:13873800-13874200	Enhancers	Osteobl	bone
22	chr7:13873800-13874400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:13873800-13874400	Enhancers	HSMM	muscle
24	chr7:13873800-13874600	Enhancers	NHEK	skin
25	chr7:13873800-13875600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:13874000-13874200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr7:13874000-13874200	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr7:13874000-13874400	Flanking Active TSS	Psoas Muscle	Psoas
29	chr7:13874000-13874400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr7:13874000-13874600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr7:13874000-13875000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:13874000-13875400	Enhancers	Fetal Brain Female	brain
33	chr7:13874000-13876400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr7:13874000-13876400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:13874000-13876600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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