Variant report

Variant	rs12533273
Chromosome Location	chr7:120270057-120270058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2189976	0.94[ASW][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap]
rs34238259	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4727911	0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4727912	0.94[ASW][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap]
rs4730967	0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4730970	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4730972	0.94[ASW][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs60500498	0.81[AMR][1000 genomes]
rs6466754	0.82[CHB][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs66889324	0.82[AMR][1000 genomes]
rs7790449	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7795646	0.83[MEX][hapmap]
rs7804315	0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12533273	CAV1	cis	cerebellum	SCAN
rs12533273	WASL	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120267000-120272800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120267600-120271400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120269200-120270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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