Variant report

Variant	rs6466754
Chromosome Location	chr7:120287937-120287938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120279116..120281101-chr7:120286923..120288588,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012983	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs12533273	0.82[CHB][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17142875	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs17142876	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[ASN][1000 genomes]
rs2189975	0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[ASN][1000 genomes]
rs2189976	0.95[CEU][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs34238259	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41474345	0.84[CHD][hapmap]
rs4727911	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4727912	0.95[CEU][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs4727914	0.81[TSI][hapmap]
rs4730967	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730970	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730972	0.95[CEU][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap]
rs4730976	0.81[TSI][hapmap]
rs60500498	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66889324	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7790449	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7795646	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs7804315	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7806660	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6466754	CAV1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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