Variant report

Variant	rs41474345
Chromosome Location	chr7:120321318-120321319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1012983	0.82[CHB][hapmap]
rs17142875	0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17142876	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2189975	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2189976	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs4727912	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs4730972	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs60063844	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6466754	0.84[CHD][hapmap]
rs66889324	0.87[ASN][1000 genomes]
rs728115	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs7795646	0.91[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524688	chr7:120305149-120327349	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1795107	chr7:120319916-120327440	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120320600-120321600	Enhancers	Adipose Nuclei	Adipose
2	chr7:120321200-120321400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:120321200-120321400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
4	chr7:120321200-120321600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:120321200-120321600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr7:120321200-120322000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:120321200-120322000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr7:120321200-120322200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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