Variant report

Variant	rs1253435
Chromosome Location	chr11:66773077-66773078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66761490..66778711-chr11:66821814..66832221,36	MCF-7	breast:
2	chr11:66772630..66777861-chr11:66788171..66792271,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173156	Chromatin interaction
ENSG00000173227	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10896145	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11227643	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11227649	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1253434	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1253439	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1253440	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1892928	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2513659	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4307728	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56016006	0.86[EUR][1000 genomes]
rs896436	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66767000-66773800	Weak transcription	K562	blood
2	chr11:66770600-66773200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:66770600-66773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:66770600-66773800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:66770600-66773800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:66770600-66774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:66770600-66774000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:66770600-66774200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:66770800-66773800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:66770800-66773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:66771000-66773800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:66771000-66773800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:66771000-66773800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:66771000-66774000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:66771000-66774000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:66771800-66773800	Weak transcription	A549	lung
17	chr11:66771800-66773800	Weak transcription	HepG2	liver
18	chr11:66772000-66773600	Weak transcription	Hela-S3	cervix
19	chr11:66772600-66776400	Weak transcription	Liver	Liver
20	chr11:66773000-66773400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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