Variant report

Variant	rs56016006
Chromosome Location	chr11:66745286-66745287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66609254..66612019-chr11:66742000..66745352,5	MCF-7	breast:
2	chr11:66604228..66607153-chr11:66743611..66745404,2	MCF-7	breast:
3	chr11:66743582..66746541-chr11:66827594..66829913,2	MCF-7	breast:
4	chr11:66743744..66746740-chr11:66821997..66824389,2	MCF-7	breast:
5	chr11:66743235..66746809-chr11:66789852..66792279,3	MCF-7	breast:
6	chr11:66745194..66747817-chr11:66749814..66753164,3	MCF-7	breast:
7	chr11:66742629..66745347-chr11:66824215..66826383,2	MCF-7	breast:
8	chr11:66608953..66611721-chr11:66744212..66746463,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10896145	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11227643	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11227649	0.82[EUR][1000 genomes]
rs1253434	0.81[EUR][1000 genomes]
rs1253435	0.86[EUR][1000 genomes]
rs1253439	0.87[EUR][1000 genomes]
rs1253440	0.87[EUR][1000 genomes]
rs1892928	0.83[EUR][1000 genomes]
rs2513659	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4307728	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4930401	0.82[ASN][1000 genomes]
rs896436	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66744000-66745400	Weak transcription	Stomach Mucosa	stomach
2	chr11:66744000-66745600	Weak transcription	Liver	Liver
3	chr11:66744400-66745400	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr11:66745200-66745400	Strong transcription	A549	lung
5	chr11:66745200-66748800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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