Variant report

Variant	rs12534371
Chromosome Location	chr7:41026417-41026418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1013576	1.00[AFR][1000 genomes]
rs1160778	1.00[AFR][1000 genomes]
rs12531482	1.00[AFR][1000 genomes]
rs12532916	1.00[AFR][1000 genomes]
rs12536716	1.00[AFR][1000 genomes]
rs12540807	1.00[AFR][1000 genomes]
rs17714132	1.00[AFR][1000 genomes]
rs17714215	1.00[AFR][1000 genomes]
rs17714657	1.00[AFR][1000 genomes]
rs17770820	1.00[AFR][1000 genomes]
rs1921751	1.00[AFR][1000 genomes]
rs1990190	1.00[AFR][1000 genomes]
rs2079507	1.00[AFR][1000 genomes]
rs2302027	1.00[AFR][1000 genomes]
rs35105954	1.00[AFR][1000 genomes]
rs4720374	1.00[AFR][1000 genomes]
rs4720375	1.00[AFR][1000 genomes]
rs4720376	1.00[AFR][1000 genomes]
rs4720382	1.00[AFR][1000 genomes]
rs4720383	1.00[AFR][1000 genomes]
rs723837	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41011800-41042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41019200-41036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41020800-41034200	Weak transcription	Aorta	Aorta
4	chr7:41024200-41028200	Enhancers	Hela-S3	cervix
5	chr7:41024400-41027400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:41024800-41026800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:41024800-41027000	Enhancers	Osteobl	bone
8	chr7:41025000-41026800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:41025000-41026800	Enhancers	NHLF	lung
10	chr7:41025000-41027000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:41025400-41026600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:41025400-41027000	Enhancers	NHDF-Ad	bronchial
13	chr7:41025600-41026600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:41026000-41026600	Enhancers	Liver	Liver
15	chr7:41026400-41026800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:41026400-41027600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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