Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1013575	0.83[AMR][1000 genomes]
rs1013576	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1160778	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12531482	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12532916	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12534371	1.00[AFR][1000 genomes]
rs12536716	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12538963	0.83[AMR][1000 genomes]
rs12540807	1.00[AFR][1000 genomes]
rs17714132	1.00[AFR][1000 genomes]
rs17714215	1.00[AFR][1000 genomes]
rs17714523	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17714657	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17770820	1.00[AFR][1000 genomes]
rs1921751	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1990190	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2302027	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35105954	1.00[AFR][1000 genomes]
rs4720374	1.00[AFR][1000 genomes]
rs4720375	1.00[AFR][1000 genomes]
rs4720376	1.00[AFR][1000 genomes]
rs4720382	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4720383	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs723837	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830972	chr7:40814709-40945917	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40890000-40919400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:40900000-40908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:40901400-40926600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:40903600-40926600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:40905800-40908800	Weak transcription	Aorta	Aorta
6	chr7:40905800-40909600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:40906200-40915800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:40906600-40921400	Weak transcription	Ovary	ovary

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