Variant report

Variant	rs12535121
Chromosome Location	chr7:47685530-47685531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10951916	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11768009	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12531737	0.89[EUR][1000 genomes]
rs12535169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537656	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13242997	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13243511	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4724606	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4724607	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4724608	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4724610	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6969715	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs965924	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47676000-47686600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:47676800-47686800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:47677000-47687000	Weak transcription	NHLF	lung
4	chr7:47678600-47687000	Weak transcription	Spleen	Spleen
5	chr7:47680800-47686400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:47680800-47686600	Weak transcription	Fetal Heart	heart
7	chr7:47681200-47686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:47681400-47686600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:47681600-47686600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:47681800-47686200	Weak transcription	A549	lung
11	chr7:47681800-47687200	Weak transcription	Osteobl	bone
12	chr7:47684800-47685600	Weak transcription	HepG2	liver
13	chr7:47685000-47686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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