Variant report

Variant	rs12535241
Chromosome Location	chr7:15442256-15442257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10244991	0.84[EUR][1000 genomes]
rs10257513	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10258461	0.83[ASN][1000 genomes]
rs10258597	0.83[ASN][1000 genomes]
rs10263019	0.84[EUR][1000 genomes]
rs10263571	0.84[EUR][1000 genomes]
rs12113254	0.83[ASN][1000 genomes]
rs12531410	0.90[EUR][1000 genomes]
rs12532854	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12533157	0.83[ASN][1000 genomes]
rs12538401	0.90[EUR][1000 genomes]
rs28392900	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28483099	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28514870	0.84[EUR][1000 genomes]
rs28520189	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28547943	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28672944	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28719030	0.84[EUR][1000 genomes]
rs34948306	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4719444	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4721430	0.83[ASN][1000 genomes]
rs4721433	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4721434	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4721435	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4721436	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4721437	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4721438	0.82[EUR][1000 genomes]
rs60713632	0.83[ASN][1000 genomes]
rs73302365	0.83[ASN][1000 genomes]
rs7808363	0.83[ASN][1000 genomes]
rs9692534	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606295	chr7:15397449-15547950	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv437537	chr7:15413574-15442630	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1031116	chr7:15428343-15568587	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1028545	chr7:15440202-15554763	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538747	chr7:15440202-15554763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15438000-15442400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:15438200-15442600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:15440600-15454000	Weak transcription	Liver	Liver
4	chr7:15442000-15442800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:15442200-15443000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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