Variant report

Variant	rs4721433
Chromosome Location	chr7:15440108-15440109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr7:15439946-15440411	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
AGMO	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10232120	0.89[ASN][1000 genomes]
rs10244991	0.92[ASN][1000 genomes]
rs10257513	0.92[ASN][1000 genomes]
rs10258461	0.96[ASN][1000 genomes]
rs10258597	0.96[ASN][1000 genomes]
rs10263019	0.92[ASN][1000 genomes]
rs10263571	0.92[ASN][1000 genomes]
rs10264776	0.89[ASN][1000 genomes]
rs12113254	0.96[ASN][1000 genomes]
rs12532854	0.92[ASN][1000 genomes]
rs12533157	0.96[ASN][1000 genomes]
rs12535241	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28392900	0.92[ASN][1000 genomes]
rs28483099	1.00[ASN][1000 genomes]
rs28514870	0.92[ASN][1000 genomes]
rs28520189	0.92[ASN][1000 genomes]
rs28547943	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28672944	0.92[ASN][1000 genomes]
rs28719030	0.89[ASN][1000 genomes]
rs34948306	0.92[ASN][1000 genomes]
rs4385372	0.92[ASN][1000 genomes]
rs4639410	0.83[EUR][1000 genomes]
rs4719444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719446	0.92[ASN][1000 genomes]
rs4721430	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721434	0.92[ASN][1000 genomes]
rs4721435	0.92[ASN][1000 genomes]
rs4721436	0.92[ASN][1000 genomes]
rs4721437	0.92[ASN][1000 genomes]
rs4721438	0.92[ASN][1000 genomes]
rs60713632	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62439273	0.92[ASN][1000 genomes]
rs6461171	0.82[EUR][1000 genomes]
rs73302365	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808363	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808567	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9692534	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606295	chr7:15397449-15547950	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv437537	chr7:15413574-15442630	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1031116	chr7:15428343-15568587	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15438000-15442400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:15438200-15442600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:15440000-15440600	Enhancers	Liver	Liver

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