Variant report

Variant	rs12535562
Chromosome Location	chr7:38560870-38560871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014571	0.91[EUR][1000 genomes]
rs1019284	0.82[EUR][1000 genomes]
rs1019285	0.82[EUR][1000 genomes]
rs1019289	0.91[EUR][1000 genomes]
rs10233620	1.00[EUR][1000 genomes]
rs10246369	1.00[EUR][1000 genomes]
rs10266609	0.82[EUR][1000 genomes]
rs10275840	1.00[EUR][1000 genomes]
rs10281857	0.86[EUR][1000 genomes]
rs10951559	0.91[EUR][1000 genomes]
rs2192681	0.82[EUR][1000 genomes]
rs4557602	0.91[EUR][1000 genomes]
rs6946268	1.00[EUR][1000 genomes]
rs6951464	0.82[EUR][1000 genomes]
rs6952029	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6953203	0.91[EUR][1000 genomes]
rs6958443	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976059	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs723001	0.91[EUR][1000 genomes]
rs7787242	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38560800-38562600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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