Variant report
| Variant | rs6958443 |
|---|---|
| Chromosome Location | chr7:38559870-38559871 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1014571 | 0.91[EUR][1000 genomes] |
| rs1019284 | 0.82[EUR][1000 genomes] |
| rs1019285 | 0.82[EUR][1000 genomes] |
| rs1019289 | 0.91[EUR][1000 genomes] |
| rs10233620 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10246369 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10266609 | 0.82[EUR][1000 genomes] |
| rs10275840 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10281857 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs10951559 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs12535562 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1558618 | 1.00[CEU][hapmap] |
| rs2118457 | 1.00[AFR][1000 genomes] |
| rs2192681 | 0.82[EUR][1000 genomes] |
| rs2392567 | 1.00[CEU][hapmap] |
| rs4557602 | 0.91[EUR][1000 genomes] |
| rs6946268 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6951464 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs6952029 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6953203 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs6960550 | 1.00[CEU][hapmap] |
| rs6976059 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs723001 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7787242 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932229 | chr7:38248340-38727527 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv830966 | chr7:38393663-38602553 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018890 | chr7:38557432-38600944 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:38558800-38560000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
