Variant report

Variant	rs12536609
Chromosome Location	chr7:27506012-27506013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1104957	0.81[ASN][1000 genomes]
rs11761657	0.83[ASN][1000 genomes]
rs11764302	0.83[ASN][1000 genomes]
rs12540632	0.82[ASN][1000 genomes]
rs12666726	0.82[ASN][1000 genomes]
rs12668753	0.82[ASN][1000 genomes]
rs12668786	0.82[ASN][1000 genomes]
rs12673629	0.80[ASN][1000 genomes]
rs17155265	0.81[ASN][1000 genomes]
rs17155267	0.83[ASN][1000 genomes]
rs17155270	0.83[ASN][1000 genomes]
rs17743751	0.81[ASN][1000 genomes]
rs36039417	0.83[ASN][1000 genomes]
rs3735572	0.80[ASN][1000 genomes]
rs55692627	0.83[ASN][1000 genomes]
rs6967510	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27505800-27507400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27506000-27506400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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