Variant report
| Variant | rs17155270 |
|---|---|
| Chromosome Location | chr7:27504332-27504333 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:27500593..27502178-chr7:27504242..27507018,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000213781 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1104957 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs11761657 | 0.97[ASN][1000 genomes] |
| rs11764302 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12536609 | 0.83[ASN][1000 genomes] |
| rs12540632 | 0.93[ASN][1000 genomes] |
| rs12666726 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs12668753 | 0.87[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12668786 | 1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12673629 | 0.81[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17155265 | 0.95[ASN][1000 genomes] |
| rs17155267 | 0.96[ASN][1000 genomes] |
| rs17743751 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs36039417 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3735572 | 0.94[ASN][1000 genomes] |
| rs3735573 | 0.91[ASN][1000 genomes] |
| rs55692627 | 0.96[ASN][1000 genomes] |
| rs6967510 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27503800-27504800 | Enhancers | Rectal Mucosa Donor 31 | rectum |
