Variant report

Variant	rs12536679
Chromosome Location	chr7:16525090-16525091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10950624	0.85[ASN][1000 genomes]
rs10950625	0.85[ASN][1000 genomes]
rs10950626	0.86[ASN][1000 genomes]
rs11972664	0.85[ASN][1000 genomes]
rs11982808	0.85[ASN][1000 genomes]
rs17365530	0.90[JPT][hapmap]
rs2528463	0.89[ASN][1000 genomes]
rs2528464	1.00[ASN][1000 genomes]
rs2528465	0.91[ASN][1000 genomes]
rs2704670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2704671	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2704672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2704673	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6952900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784407	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv887754	chr7:16509086-16541388	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv887755	chr7:16509086-16542364	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv887756	chr7:16520193-16566391	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16519800-16526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:16523600-16525600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:16523600-16525800	Enhancers	HMEC	breast
4	chr7:16523800-16525600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:16524000-16525400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:16524000-16525400	Enhancers	NHEK	skin
7	chr7:16524000-16525600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:16524000-16525800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:16524200-16525200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:16524200-16525200	Enhancers	HepG2	liver
11	chr7:16524200-16525200	Enhancers	K562	blood
12	chr7:16524200-16525400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:16524600-16525200	Enhancers	NH-A	brain
14	chr7:16524600-16528000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:16524800-16525200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:16524800-16525200	Enhancers	Fetal Intestine Large	intestine
17	chr7:16524800-16526600	Weak transcription	Pancreas	Pancrea
18	chr7:16524800-16533400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:16525000-16525600	Enhancers	A549	lung
20	chr7:16525000-16528000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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