Variant report

Variant	rs12536798
Chromosome Location	chr7:100763467-100763468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100754972..100758673-chr7:100760651..100765191,4	K562	blood:
2	chr7:100761869..100763568-chr7:100766279..100768842,3	K562	blood:
3	chr7:100748557..100751885-chr7:100761807..100763776,3	MCF-7	breast:
4	chr7:100733241..100735630-chr7:100761919..100764639,2	K562	blood:
5	chr7:100752460..100757093-chr7:100759104..100763544,6	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12530725	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12530730	0.87[EUR][1000 genomes]
rs12535610	0.91[AFR][1000 genomes]
rs12538402	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34144144	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34772825	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35532237	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35664038	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35799997	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36093166	0.91[AFR][1000 genomes]
rs4727479	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729659	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4729661	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4729662	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4729663	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729664	0.86[EUR][1000 genomes]
rs62483748	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950982	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6951404	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955537	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6956010	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs757722	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7783913	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7784462	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7784489	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7784514	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7790022	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1033081	chr7:100669629-100771824	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
6	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
7	nsv464649	chr7:100739682-100810983	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv607972	chr7:100739682-100810983	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
10	nsv1018841	chr7:100760410-100868299	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100752400-100764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:100752600-100765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:100755000-100764800	Weak transcription	Psoas Muscle	Psoas
4	chr7:100757000-100765400	Enhancers	HUVEC	blood vessel
5	chr7:100757600-100770400	Enhancers	Placenta	Placenta
6	chr7:100759600-100765400	Enhancers	NHDF-Ad	bronchial
7	chr7:100759800-100764000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:100759800-100765400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:100759800-100765400	Enhancers	Osteobl	bone
10	chr7:100760200-100763800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:100760200-100765400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:100760200-100765400	Enhancers	NH-A	brain
13	chr7:100760400-100763600	Enhancers	Fetal Stomach	stomach
14	chr7:100760400-100763600	Enhancers	Stomach Smooth Muscle	stomach
15	chr7:100760400-100765200	Enhancers	Ovary	ovary
16	chr7:100760400-100765400	Enhancers	Fetal Muscle Leg	muscle
17	chr7:100760400-100765400	Enhancers	NHLF	lung
18	chr7:100760800-100765200	Enhancers	A549	lung
19	chr7:100760800-100765400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:100761000-100764600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:100761000-100764600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:100761000-100764800	Weak transcription	Stomach Mucosa	stomach
23	chr7:100761000-100765200	Weak transcription	K562	blood
24	chr7:100761200-100764600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:100761400-100765400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:100761800-100765400	Weak transcription	Fetal Lung	lung
27	chr7:100761800-100770400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr7:100762000-100765200	Weak transcription	Right Atrium	heart
29	chr7:100762000-100765600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:100762200-100770200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:100762400-100764600	Weak transcription	Left Ventricle	heart
32	chr7:100762400-100764600	Weak transcription	Right Ventricle	heart
33	chr7:100762800-100765400	Enhancers	Fetal Muscle Trunk	muscle
34	chr7:100763000-100763600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr7:100763000-100763600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:100763000-100763600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:100763000-100763600	Enhancers	Hela-S3	cervix
38	chr7:100763000-100763600	Enhancers	HMEC	breast
39	chr7:100763000-100763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr7:100763000-100763800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr7:100763000-100763800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr7:100763000-100764000	Enhancers	Aorta	Aorta
43	chr7:100763000-100764200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:100763000-100764800	Enhancers	HSMM	muscle
45	chr7:100763000-100765200	Weak transcription	NHEK	skin
46	chr7:100763000-100765600	Enhancers	HSMMtube	muscle
47	chr7:100763200-100763800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:100763200-100763800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr7:100763200-100764800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:100763200-100770200	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links