Variant report

Variant	rs4729659
Chromosome Location	chr7:100757022-100757023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100755368..100757885-chr7:100766131..100768101,2	K562	blood:
2	chr7:100752460..100757093-chr7:100759104..100763544,6	MCF-7	breast:
3	chr7:100752507..100754161-chr7:100756602..100759066,2	MCF-7	breast:
4	chr7:100754972..100758673-chr7:100760651..100765191,4	K562	blood:
5	chr7:100755889..100757654-chr7:100761288..100763415,3	K562	blood:
6	chr7:100750163..100751939-chr7:100756081..100757683,2	MCF-7	breast:
7	chr7:100486630..100488424-chr7:100756807..100758867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176125	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12530725	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12530730	0.80[EUR][1000 genomes]
rs12535610	0.95[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12536798	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12538402	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2410795	0.82[AMR][1000 genomes]
rs34144144	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34772825	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35532237	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35664038	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35799997	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36093166	0.95[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3890122	0.85[ASN][1000 genomes]
rs4727479	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4729661	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4729662	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4729663	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62483748	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6945281	0.83[AFR][1000 genomes]
rs6950982	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6951404	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6955537	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6956010	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs757722	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783913	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7784462	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7784489	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7784514	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790022	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1033081	chr7:100669629-100771824	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
6	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
7	nsv464649	chr7:100739682-100810983	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv607972	chr7:100739682-100810983	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4729659	RABL5	cis	Esophagus Muscularis	GTEx

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100747600-100760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:100747800-100760600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:100750000-100760200	Weak transcription	Hela-S3	cervix
4	chr7:100752400-100757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:100752400-100757400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:100752400-100757400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:100752400-100764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:100752600-100757400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:100752600-100757400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:100752600-100765400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:100752800-100757400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:100752800-100760200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:100752800-100760600	Weak transcription	K562	blood
14	chr7:100753400-100757200	Weak transcription	HMEC	breast
15	chr7:100753400-100757200	Weak transcription	NHEK	skin
16	chr7:100753400-100757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:100753400-100760400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:100753600-100757400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:100754600-100757400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr7:100755000-100764800	Weak transcription	Psoas Muscle	Psoas
21	chr7:100755600-100757200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:100755600-100757200	Weak transcription	A549	lung
23	chr7:100755600-100763200	Weak transcription	Lung	lung
24	chr7:100755800-100760200	Weak transcription	HSMMtube	muscle
25	chr7:100755800-100760800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:100756000-100757200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:100756000-100757400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:100756000-100757400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:100756000-100757400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:100756000-100757400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:100756000-100757400	Weak transcription	NHLF	lung
32	chr7:100756000-100760200	Weak transcription	Left Ventricle	heart
33	chr7:100756000-100760200	Weak transcription	Right Atrium	heart
34	chr7:100756000-100760400	Weak transcription	Right Ventricle	heart
35	chr7:100756000-100763200	Weak transcription	Spleen	Spleen
36	chr7:100756200-100757200	Weak transcription	HepG2	liver
37	chr7:100756200-100757200	Weak transcription	HSMM	muscle
38	chr7:100756200-100757200	Weak transcription	Osteobl	bone
39	chr7:100756200-100757400	Weak transcription	NHDF-Ad	bronchial
40	chr7:100756200-100760400	Weak transcription	Ovary	ovary
41	chr7:100756400-100757400	Weak transcription	NH-A	brain
42	chr7:100756400-100757600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:100756400-100757600	Weak transcription	Placenta	Placenta
44	chr7:100757000-100765400	Enhancers	HUVEC	blood vessel

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