Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr7:136971990-136972188	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000202023	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10215890	1.00[ASN][1000 genomes]
rs10500126	1.00[ASN][1000 genomes]
rs1096912	1.00[ASN][1000 genomes]
rs12112313	0.93[AMR][1000 genomes]
rs12113527	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1431097	1.00[ASN][1000 genomes]
rs17169051	1.00[YRI][hapmap]
rs17169053	0.86[YRI][hapmap]
rs17169059	1.00[YRI][hapmap]
rs17169061	0.93[YRI][hapmap]
rs17603449	1.00[ASN][1000 genomes]
rs17603498	1.00[ASN][1000 genomes]
rs17661392	1.00[ASN][1000 genomes]
rs1835536	0.84[AFR][1000 genomes]
rs322241	1.00[ASN][1000 genomes]
rs322243	1.00[ASN][1000 genomes]
rs322249	1.00[ASN][1000 genomes]
rs6961235	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6970530	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979228	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788394	1.00[YRI][hapmap]
rs7792298	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136961400-136973600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:136961400-136980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:136968000-136973600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:136968600-136989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136969600-136973800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:136969600-136974200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:136970600-136972800	Enhancers	Brain Hippocampus Middle	brain
9	chr7:136971600-136972200	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:136971600-136972200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:136971800-136972200	Enhancers	Brain Angular Gyrus	brain
12	chr7:136972000-136972200	Enhancers	Fetal Stomach	stomach
13	chr7:136972000-136978400	Weak transcription	Brain Substantia Nigra	brain

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