Variant report

Variant	rs17169059
Chromosome Location	chr7:136984520-136984521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136983518..136985110-chr7:136986061..136988614,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12113527	0.93[YRI][hapmap]
rs12536916	1.00[YRI][hapmap]
rs17169051	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169053	1.00[CEU][hapmap];0.89[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169061	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1835536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961235	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970530	0.91[MKK][hapmap];1.00[YRI][hapmap]
rs6979228	1.00[YRI][hapmap]
rs7788394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792298	0.89[ASW][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv889240	chr7:136972027-137038092	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889241	chr7:136976713-137038092	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136968600-136989600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:136972200-136990400	Weak transcription	Fetal Stomach	stomach
3	chr7:136975200-136991000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:136976600-136991000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:136979200-136989800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:136979400-136990800	Enhancers	Brain Anterior Caudate	brain
7	chr7:136980600-136984600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:136981000-136985600	Weak transcription	Fetal Kidney	kidney
9	chr7:136981400-136986400	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:136981600-136986800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:136981600-136990200	Weak transcription	Fetal Lung	lung
12	chr7:136981600-136990800	Enhancers	Brain Hippocampus Middle	brain
13	chr7:136982200-136986400	Enhancers	Brain Angular Gyrus	brain
14	chr7:136982600-136989000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:136982800-136985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:136982800-137008400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:136983000-136984600	Enhancers	Liver	Liver
18	chr7:136983200-136989000	Enhancers	Brain Substantia Nigra	brain
19	chr7:136983400-136984800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:136983600-136985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:136983800-136987800	Weak transcription	Fetal Brain Female	brain
22	chr7:136983800-136989800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:136983800-136990600	Weak transcription	Fetal Heart	heart
24	chr7:136984000-136985000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:136984000-136985200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:136984000-136985200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:136984000-136986800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:136984000-136990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:136984200-136985600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:136984200-136990800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:136984400-136990400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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