Variant report

Variant	rs12538310
Chromosome Location	chr7:96946661-96946662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11764429	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11767282	0.88[ASN][1000 genomes]
rs1420174	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73238878	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73392167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028319	chr7:96940309-97012717	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv274910	chr7:96946369-96968328	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2762689	chr7:96946381-96946699	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96943800-96947000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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