Variant report
| Variant | rs73238878 |
|---|---|
| Chromosome Location | chr7:96922808-96922809 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr7:96922285-96922839 | H1-neurons | neurons: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221192 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10486857 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11764429 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11972340 | 0.84[ASN][1000 genomes] |
| rs12538310 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1420174 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1476601 | 0.82[ASN][1000 genomes] |
| rs2014018 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2158498 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28369152 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28413832 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73238872 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs73392167 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs878502 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
