Variant report

Variant	rs11972340
Chromosome Location	chr7:96900736-96900737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10486857	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764429	0.84[ASN][1000 genomes]
rs1420174	0.84[ASN][1000 genomes]
rs1476601	0.98[ASN][1000 genomes]
rs2014018	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158498	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394618	0.81[EUR][1000 genomes]
rs28369152	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413832	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238872	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238878	0.84[ASN][1000 genomes]
rs878502	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96898800-96901000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:96899000-96901400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:96899600-96900800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:96899600-96901200	Weak transcription	GM12878-XiMat	blood
5	chr7:96900200-96901200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96900400-96901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:96900400-96901200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:96900400-96901400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:96900400-96902200	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr7:96900600-96902200	Active TSS	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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