Variant report

Variant	rs10486857
Chromosome Location	chr7:96911814-96911815
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11764429	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11972340	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420174	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1476601	0.98[ASN][1000 genomes]
rs2014018	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158498	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394618	0.85[EUR][1000 genomes]
rs28369152	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413832	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238872	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238878	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs878502	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10486857	SLC12A9	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96910800-96912600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:96911200-96912800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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