Variant report

Variant	rs12538729
Chromosome Location	chr7:151000447-151000448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150998233..151001013-chr7:151008605..151011052,2	K562	blood:
2	chr7:150869179..150870329-chr7:151000054..151001183,7	K562	blood:
3	chr7:150865011..150865946-chr7:151000191..151001152,4	K562	blood:
4	chr7:150872457..150873456-chr7:151000247..151001139,5	MCF-7	breast:
5	chr7:150987600..150989961-chr7:150999462..151001040,2	MCF-7	breast:
6	chr7:150820770..150821764-chr7:151000263..151001132,6	MCF-7	breast:
7	chr7:150948685..150949333-chr7:151000281..151001196,2	MCF-7	breast:
8	chr7:150595297..150595901-chr7:151000224..151001110,2	MCF-7	breast:
9	chr7:150820448..150822484-chr7:151000193..151001183,12	K562	blood:
10	chr7:150941742..150942771-chr7:151000251..151001109,3	MCF-7	breast:
11	chr7:150941150..150943099-chr7:151000230..151001208,9	MCF-7	breast:
12	chr7:150934273..150936428-chr7:150997708..151000600,2	K562	blood:
13	chr7:150822023..150822998-chr7:151000299..151001077,2	MCF-7	breast:
14	chr7:150820634..150822690-chr7:150999660..151002370,2	MCF-7	breast:
15	chr7:150869799..150870438-chr7:151000265..151000938,3	MCF-7	breast:
16	chr7:150942289..150942949-chr7:151000175..151000732,2	K562	blood:
17	chr7:150890459..150893225-chr7:150998125..151000764,2	K562	blood:
18	chr7:150999895..151001425-chr7:151003221..151005826,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133612	Chromatin interaction
ENSG00000211517	Chromatin interaction
ENSG00000183016	Chromatin interaction
ENSG00000082014	Chromatin interaction

rs_ID	r²[population]
rs887018	0.81[AMR][1000 genomes]
rs909210	0.81[AMR][1000 genomes]

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150997000-151002000	Weak transcription	Gastric	stomach
2	chr7:150997200-151000800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:150997200-151000800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:150997600-151000800	Weak transcription	Pancreas	Pancrea
5	chr7:150998800-151000600	Weak transcription	Spleen	Spleen
6	chr7:151000200-151000600	Flanking Active TSS	Fetal Brain Female	brain
7	chr7:151000200-151000800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr7:151000200-151001200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr7:151000200-151002400	Enhancers	Fetal Brain Male	brain
10	chr7:151000400-151000600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:151000400-151000600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr7:151000400-151000600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
13	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:151000400-151000600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr7:151000400-151000600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:151000400-151000600	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
18	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
20	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
21	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	NH-A	brain
22	chr7:151000400-151000600	Flanking Bivalent TSS/Enh	Osteobl	bone
23	chr7:151000400-151000800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr7:151000400-151000800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:151000400-151000800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr7:151000400-151000800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:151000400-151000800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:151000400-151000800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr7:151000400-151000800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
30	chr7:151000400-151000800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
31	chr7:151000400-151000800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr7:151000400-151000800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr7:151000400-151000800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
34	chr7:151000400-151000800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr7:151000400-151000800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:151000400-151000800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
37	chr7:151000400-151000800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
38	chr7:151000400-151000800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
39	chr7:151000400-151000800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:151000400-151000800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:151000400-151000800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
42	chr7:151000400-151000800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:151000400-151000800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:151000400-151000800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:151000400-151000800	Active TSS	Aorta	Aorta
46	chr7:151000400-151000800	Enhancers	Liver	Liver
47	chr7:151000400-151000800	Active TSS	Brain Anterior Caudate	brain
48	chr7:151000400-151000800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
49	chr7:151000400-151000800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
50	chr7:151000400-151000800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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