Variant report

Variant	rs12540501
Chromosome Location	chr7:19362398-19362399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11768802	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11974679	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12539237	0.84[AMR][1000 genomes]
rs12700029	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12700030	0.83[AMR][1000 genomes]
rs12700031	0.84[AMR][1000 genomes]
rs12700032	0.84[AMR][1000 genomes]
rs1465297	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17437525	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4236294	0.83[AMR][1000 genomes]
rs4409312	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4721753	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721757	0.84[AMR][1000 genomes]
rs4721758	0.82[AMR][1000 genomes]
rs56162247	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6970576	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1021194	chr7:19290916-19521199	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19357600-19366600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:19361400-19362600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:19361600-19362400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:19362000-19365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:19362200-19366800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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