Variant report
| Variant | rs12540615 |
|---|---|
| Chromosome Location | chr7:136718553-136718554 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10954569 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11971236 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11982015 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11984039 | 0.81[EUR][1000 genomes] |
| rs17500423 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17506733 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17506977 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17507588 | 0.86[ASN][1000 genomes] |
| rs1991115 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34084423 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62487068 | 0.81[AMR][1000 genomes] |
| rs62487070 | 0.81[AMR][1000 genomes] |
| rs62487071 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62487072 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62487074 | 0.86[ASN][1000 genomes] |
| rs62487075 | 0.86[ASN][1000 genomes] |
| rs6960754 | 1.00[ASN][1000 genomes] |
| rs6978427 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7779506 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7779921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7779999 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv831147 | chr7:136583444-136755741 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv2753059 | chr7:136633745-136893745 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889237 | chr7:136715167-136793350 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136711600-136721400 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr7:136717800-136720600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
