Variant report

Variant	rs34084423
Chromosome Location	chr7:136720590-136720591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10954569	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11762896	0.88[AFR][1000 genomes]
rs11971236	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11982015	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11984039	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12540615	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1424549	0.84[AFR][1000 genomes]
rs17500423	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17506977	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1991115	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62487071	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62487072	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6978427	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7779506	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779921	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7779999	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv889237	chr7:136715167-136793350	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136711600-136721400	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:136717800-136720600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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